Journal: EMBO Reports
Article Title: ATAD2 drives melanoma growth and progression and inhibits ferroptosis
doi: 10.1038/s44319-025-00660-w
Figure Lengend Snippet: ( A ) The Gene Expression Profiling Interactive Analysis (GEPIA) data was used for plotting mRNA expression of family IV of bromodomain-containing members. mRNA expression of BRPF1, BRPF2, BRPF3, BRD7, BRD9, and ATAD2b is shown in melanoma patient samples ( n = 461) and normal skin samples ( n = 558). ( B , C ) Human Protein Atlas showing ATAD2 protein expression intensity in different patient samples. ( D ) List of transcription factors with predicted DNA binding sites on the ATAD1 promoter DNA sequence (1 kb upstream from the transcription start site) generated using PROMO search. ( E ) TCGA melanoma data showing the correlation between ATAD2 and E2F1 mRNA expression. ( F ) In the indicated melanoma cell lines ATAD2 mRNA expression was measured using RT-qPCR and plotted relative to primary human fibroblast cells. ACTINB was used as a normalization control (left) and ATAD2 protein expression in the shown cells was measured via western blotting. ACTINB was used as loading control (right). ( G ) The indicated cell lines were treated with 5μM of BAY-850 for 3 days, and viability was assessed by 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide (MTT) assay. Relative cell viability in treated condition relative to DMSO-treated condition is presented, ns P = 0.2244, ** P = 0.0013, **** P = < 0.0001, **** P = < 0.0001, from left to right. ( A ) P value was calculated using ANOVA (Analysis of Variance) for differential expression analysis between tumor and normal tissues. ( G ) P value was calculated using unpaired Student’s t test using three independent replicates.
Article Snippet: Melanoma cell lines (A375, M14, SKMEL-2, SKMEL-103), HEK-293T and primary human fibroblast cells were purchased from American Type Culture Collection (ATCC), Sigma and Cytion as listed in Reagents and Tools Table and maintained in a humidified atmosphere of 5% CO 2 at 37 °C in Dulbecco’s modified Eagle medium (DMEM; Life Technologies, Carlsbad, CA, USA) or Roswell Park Memorial Institute-1640 Medium (RPMI)-1640 Medium; (Life Technologies), each supplemented with 10% fetal bovine serum and 1% penicillin/streptomycin (both from Life Technologies).
Techniques: Gene Expression, Expressing, Binding Assay, Sequencing, Generated, Quantitative RT-PCR, Control, Western Blot, MTT Assay, Quantitative Proteomics